Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs34764770 chr19:53131971 C/T 4.55E-6 487 30.8 31.18 26.27 KM Plot
PRAD rs34770465 chr1:243921068 C/CTTT 0.00016 483 31.18 28.93 49.68 KM Plot
PRAD rs34791859 chr2:239070919 G/C 2.12E-9 472 31.37 28.8 30.45 KM Plot
PRAD rs34807814 chr2:239104639 T/TG 1.0E-5 478 32.47 28.97 27.4 KM Plot
PRAD rs34818878 chr11:24233106 T/C 4.41E-14 488 31 31.27 13.52 KM Plot
PRAD rs34835781 chr17:62984609 G/A 1.22E-8 481 30.8 31.87 19.63 KM Plot
PRAD rs34857592 chr7:6782548 C/A 7.73E-5 486 31.12 29.97 38.33 KM Plot
PRAD rs34866203 chr3:105606765 C/T 1.63E-7 476 31.28 28.5 48.98 KM Plot
PRAD rs34876451 chr5:179037864 G/GT 0.000144 484 30.33 35.8 32.9 KM Plot
PRAD rs34881816 chr1:93852229 T/TG 3.56E-6 494 31.3 28.67 18.97 KM Plot
PRAD rs34899283 chr7:6774535 T/C 3.73E-5 490 31.23 30.08 32.23 KM Plot
PRAD rs34942620 chr8:143424089 C/T 1.34E-5 488 30.3 30.8 28.77 KM Plot
PRAD rs34954834 chr8:143451046 T/C 0.000115 487 30.63 31.02 31.87 KM Plot
PRAD rs34958829 chr1:6720569 GATT/G 0.000128 494 29.6 31.13 30.73 KM Plot
PRAD rs34966046 chr22:18442612 GA/G 3.96E-6 494 30.8 31.87 26.37 KM Plot